|
We use the following annotations to filter out conserved elements that overlap exons and known repeats.
We download the annotations from
the UCSC Genome Browser,
Ensembl and
FlyBase.
| Organism | Annotations |
|---|
| Human | RefSeq Genes, Ensembl Genes, Genscan Genes, UCSC Known Genes, RepeatMasker |
| Mouse | RefSeq Genes, Ensembl Genes, Genscan Genes, UCSC Known Genes, RepeatMasker |
| Chicken | RefSeq Genes, Ensembl Genes, Genscan Genes, RepeatMasker |
| Frog | RefSeq Genes, Ensembl Genes, Genscan Genes, RepeatMasker |
| Zebrafish (Zv6) | Ensembl Genes, Genscan Genes, Zebrafish mRNAs, Human UCSC Known Genes (peptides), RepeatMasker |
| Zebrafish (Zv7) | RefSeq Genes, Ensembl Genes, Zebrafish mRNAs, Human UCSC Known Genes (peptides), RepeatMasker |
| Fugu | Ensembl Genes, Fugu mRNAs, RepeatMasker |
| Tetraodon | GAZE Genes, Genscan Genes, Tetraodon mRNAs, RepeatMasker |
| Stickleback | Ensembl Genes, Stickleback mRNAs, RepeatMasker |
| Medaka | Ensembl Genes, Medaka mRNAs, RepeatMasker |
| Drosophila melanogaster | RefSeq Genes, FlyBase Genes |
|
